RNA-Seq CAGE (Cap Analysis of Gene Expression) analysis of mice cells in RIKEN FANTOM5 project
RNA-Seq mRNA baseline
Organism:
Mus musculus
Raw Data Provider:
Sample Characteristics
Experimental Variables
Analysed
Run
age
cell type
developmental stage
organism
organism part
sample lot number
sex
strain
cell type
Yes
DRR009633
inner ear hair cell
not available
Mus musculus
organ of corti
NA
male and female
not available
inner ear hair cell
Yes
DRR009634
enterocyte
adult
Mus musculus
ileum
RANKL_Ep+_a
male
Balb/c
enterocyte
Yes
DRR009635
enterocyte
adult
Mus musculus
ileum
RANKL_Ep+_b
male
Balb/c
enterocyte
Yes
DRR009636
enterocyte
adult
Mus musculus
ileum
RANKL_Ephigh_a
male
Balb/c
enterocyte
Yes
DRR009637
M cell
adult
Mus musculus
ileum
M cell_a
male
Balb/c
M cell
Yes
DRR009638
M cell
adult
Mus musculus
ileum
M cell_b
male
Balb/c
M cell
Yes
DRR009639
M cell
adult
Mus musculus
ileum
M cell_c
male
Balb/c
M cell
Yes
DRR009641
stem cell
not available
Mus musculus
small intestine
NA
male
not available
stem cell
Yes
DRR009642
stem cell
not available
Mus musculus
small intestine
NA
female
not available
stem cell
Yes
DRR009643
stem cell
not available
Mus musculus
small intestine
NA
female
not available
stem cell
Yes
DRR009644
stem cell
not available
Mus musculus
bone marrow
NA
not available
not available
stem cell
Yes
DRR009645
stem cell
not available
Mus musculus
bone marrow
NA
not available
not available
stem cell
Yes
DRR009646
stem cell
not available
Mus musculus
bone marrow
NA
not available
not available
stem cell
Yes
DRR009647
stem cell
not available
Mus musculus
bone marrow
NA
not available
not available
stem cell
Yes
DRR009648
stem cell
not available
Mus musculus
bone marrow
NA
not available
not available
stem cell
Yes
DRR009649
stem cell
not available
Mus musculus
bone marrow
NA
not available
not available
stem cell
Yes
DRR009650
Sox2+ supporting cells
not available
Mus musculus
organ of corti
NA
male and female
not available
Sox2+ supporting cells
Yes
DRR009651
9 to 10 week
common myeloid progenitor
adult
Mus musculus
bone marrow
rep1
male
C57BL/8J
common myeloid progenitor
Yes
DRR009652
9 to 10 week
common myeloid progenitor
adult
Mus musculus
bone marrow
rep2
male
C57BL/8J
common myeloid progenitor
Yes
DRR009653
9 to 10 week
common myeloid progenitor
adult
Mus musculus
bone marrow
rep3
male
C57BL/8J
common myeloid progenitor
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