RNA-seq of long poly adenylated RNA and long non poly adenylated RNA from ENCODE cell lines
RNA-Seq mRNA baseline
Organism:
Homo sapiens
Publications
- Djebali S, Davis CA, Merkel A, Dobin A, Lassmann T et al. (2012) Landscape of transcription in human cells.
- Deng X, Hiatt JB, Nguyen DK, Ercan S, Sturgill D et al. (2011) Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Drosophila melanogaster.
Sample Characteristics
Experimental Variables
Analysed
Run
organism
sex
cell line
cellular component
cell type
karyotype
biosource provider
disease
organism part
cell line
cellular component
rna
Yes
SRR089332
Homo sapiens
female
GM12878
whole cell
B cell
relatively normal
Coriell Cell Repositories http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878
GM12878
whole cell
total RNA
Yes
SRR089333
Homo sapiens
female
GM12878
whole cell
B cell
relatively normal
Coriell Cell Repositories http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878
GM12878
whole cell
total RNA
Yes
SRR089334
Homo sapiens
female
K562
whole cell
cancer
ATCC
chronic myelogenous leukemia (CML)
K562
whole cell
total RNA
Yes
SRR089335
Homo sapiens
female
K562
whole cell
cancer
ATCC
chronic myelogenous leukemia (CML)
K562
whole cell
total RNA
Yes
SRR089336
Homo sapiens
female
K562
cytosol
cancer
ATCC
chronic myelogenous leukemia (CML)
K562
cytosol
long polyA RNA
Yes
SRR307897
Homo sapiens
GM12878
whole cell
B cell
Coriell
GM12878
whole cell
long polyA RNA
Yes
SRR307898
Homo sapiens
GM12878
whole cell
B cell
Coriell
GM12878
whole cell
long polyA RNA
Yes
SRR307899
Homo sapiens
GM12878
cytosol
B cell
Coriell
GM12878
cytosol
long polyA RNA
Yes
SRR307900
Homo sapiens
GM12878
cytosol
B cell
Coriell
GM12878
cytosol
long polyA RNA
Yes
SRR307901
Homo sapiens
AG445
whole cell
fibroblast
Coriell
lung
AG445
whole cell
long polyA RNA
Yes
SRR307902
Homo sapiens
AG445
whole cell
fibroblast
Coriell
lung
AG445
whole cell
long polyA RNA
Yes
SRR307903
Homo sapiens
BJ
whole cell
fibroblast
ATCC
skin
BJ
whole cell
long polyA RNA
Yes
SRR307904
Homo sapiens
BJ
whole cell
fibroblast
ATCC
skin
BJ
whole cell
long polyA RNA
Yes
SRR307905
Homo sapiens
HUVEC cell line
whole cell
human umblical vein endothelial cells (HUVEC)
Lonza
umbilical vein
HUVEC cell line
whole cell
long polyA RNA
Yes
SRR307906
Homo sapiens
HUVEC cell line
whole cell
human umblical vein endothelial cells (HUVEC)
Lonza
umbilical vein
HUVEC cell line
whole cell
long polyA RNA
Yes
SRR307907
Homo sapiens
A549
whole cell
epithelial
ATCC
carcinoma
lung
A549
whole cell
long polyA RNA
Yes
SRR307908
Homo sapiens
A549
whole cell
epithelial
ATCC
carcinoma
lung
A549
whole cell
long polyA RNA
Yes
SRR307909
Homo sapiens
HUVEC cell line
nucleus
human umblical vein endothelial cells (HUVEC)
Lonza
umbilical vein
HUVEC cell line
nucleus
long polyA RNA
Yes
SRR307910
Homo sapiens
HUVEC cell line
nucleus
human umblical vein endothelial cells (HUVEC)
Lonza
umbilical vein
HUVEC cell line
nucleus
long polyA RNA
Yes
SRR307911
Homo sapiens
H1-hESC
whole cell
embryonic stem cell
WiCell Research Institute
H1-hESC
whole cell
long polyA RNA
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